Taken from Wesleyan Cluster Wiki: https://dokuwiki.wesleyan.edu/doku.php?id=cluster:73#r_r_parallel
R & R/parallel
Native CentOS R is most up to date on node swallowtail for interactive use. IT also has a bunch of packages installed.
Note: All versions were compiled with Blas and Lapack libraries found in the Cluster Math Kernel Libraries.
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program: R v3.1.0 (default)
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install dir: /home/apps/R/3.1.0
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docs:
Set your environment as follows for 3.1.0
. /share/apps/intel/composerxe/bin/iccvars.sh intel64 . /share/apps/intel/composerxe/bin/ifortvars.sh intel64 export MKL_HOME=/share/apps/intel/composerxe/mkl export PATH=/share/apps/R/3.1.0/bin:$PATH export LD_LIBRARY_PATH=/share/apps/R/3.1.0/lib64/R/lib:$LD_LIBRARY_PATH
Set your environment as follows for 2.14.1
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contains modules: Igraph and Multicore
. /share/apps/intel/composerxe/bin/iccvars.sh intel64 . /share/apps/intel/composerxe/bin/ifortvars.sh intel64 export MKL_HOME=/share/apps/intel/composerxe/mkl export PATH=/share/apps/R/2.14.1/bin:$PATH export LD_LIBRARY_PATH=/share/apps/R/2.14.1/lib64/R/lib:$LD_LIBRARY_PATH
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program: R v2.8.1
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install dir: /home/apps/R/2.8.1
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docs:
Set your environment as follows for 2.8.1
. /share/apps/intel/cce/10.0.025/bin/iccvars.sh . /share/apps/intel/fce/10.0.025/bin/ifortvars.sh export PATH=/share/apps/R/2.8.1/bin:$PATH export LD_LIBRARY_PATH=/share/apps/intel/cmkl/10.0.011/lib/em64t:$LD_LIBRARY_PATH
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program: Rparallel v 0.61
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install dir: /home/apps/RParallel
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docs:
Please consult the README file in install dir to set your environment.